Some links are out of date - I apologise for that!
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General Unified Threshold model for Survival (GUTS). R package available (search for GUTS
at www.r-project.org). See also here.
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The US EPA's AQUATOX model simulates fate and effects of
pollutants in aquatic systems.
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SPEAR: SPEAR (Species At Risk) is a bioindicator system based on biological traits
and focused on various types of contaminants in fresh waters. Developed at UFZ Leipzig, by the Department of System Ecotoxicology.
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DEB: The Dynamic Energy Budget (DEB) theory aims to identify simple
quantitative rules for the organization of metabolism of individual organisms that can be understood from basic first principles.Developed at the Free University of Amsterdam, by the
Department of Theoretical Biology.
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DEBtox: The mission of DEBtox is to simplify biology to get to the essence of what toxicants (and other
stresses) are actually doing to organisms. Developed at the Free University of Amsterdam, by the Department of Theoretical
Biology.
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The WEBFRAM website allows to use pesticide risk assessment tools for free. for example you can
generate SSDs there and do probabilistic risk assessments.
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The CEFIC-LRI Toolbox has databases and models, e.g. on bioconcentration or
biotransformation, but also environmental fate and other topics.